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IGVFFI9068WKTW

released
validated
File Set
IGVFDS3751NDQI(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf4_raw_rna_counts_10x2
md5sum
83eedead59a34510000d99d5be992ccb
File Size
233 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l2_raw_feature_bc_matrix.h5
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
22 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
25 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
24 GB
validated