IGVFFI9060FTBW

released

validated

File Set

IGVFDS2649QXJV(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))

Summary

cell by gene in raw feature barcode matrix

Analysis Step Version

/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/

File Format

hdf5

Content Type

raw feature barcode matrix

Content Summary

cell by gene in raw feature barcode matrix

Aliases

ansuman-satpathy:igvf4_raw_rna_counts_10x1

md5sum

9d93767c39849ec49dfb4b6da0e789fd

File Size

225 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l1_raw_feature_bc_matrix.h5

Checkfiles Version

v14

Attribution

Ansuman Satpathy, Stanford

(

HG011972 — Jesse Engreitz

)

Matrix Details

Principal Dimension

cell

Secondary Dimensions

gene

File Format Specifications

1 item

Page

Description

Type

Download

Standardized File Format

Preview

Raw RNA count matrix definition for 10x multiome

file format specification

raw_rna_count_marix_format.pdf

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8594ZCZM

MultiplexedSample

GM25256 (WTC-11)

multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples