IGVFFI8873RHRT

released
validated
{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI8873RHRT/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI8873RHRT",
    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "checkfiles_version": "v20",
    "content_md5sum": "28a02b7e89904e82f0f7fd4b741a7e51",
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2025-04-06T22:28:53.963986+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI3902HPZP/",
        "/sequence-files/IGVFFI1253KAKX/",
        "/sequence-files/IGVFFI7971FZOI/",
        "/sequence-files/IGVFFI0788VPRR/",
        "/sequence-files/IGVFFI2801DEXE/",
        "/sequence-files/IGVFFI0591NQIT/",
        "/sequence-files/IGVFFI6647GGNL/",
        "/sequence-files/IGVFFI3290BFJB/",
        "/sequence-files/IGVFFI9224RWDM/",
        "/sequence-files/IGVFFI5630YDMJ/",
        "/sequence-files/IGVFFI1490CGNG/",
        "/sequence-files/IGVFFI3218IHTK/",
        "/sequence-files/IGVFFI7861GUHL/",
        "/sequence-files/IGVFFI6861BDKN/",
        "/sequence-files/IGVFFI6217DPMD/",
        "/sequence-files/IGVFFI7919FMDA/"
    ],
    "file_format": "tar",
    "file_format_specifications": [
        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS5395YECK/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS5395YECK",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM9366TSMN/",
                "@type": [
                    "MultiplexedSample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM9366TSMN",
                "classifications": [
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000647/",
                        "status": "released",
                        "term_name": "right cerebral cortex"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000750/",
                        "status": "released",
                        "term_name": "left hippocampal formation"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000751/",
                        "status": "released",
                        "term_name": "right hippocampal formation"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000948/",
                        "status": "released",
                        "term_name": "heart"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq: sparse gene count matrix"
    },
    "file_size": 1049132808,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI8873RHRT/@@download/IGVFFI8873RHRT.tar.gz",
    "input_file_for": [
        "/matrix-files/IGVFFI0996MCPQ/",
        "/matrix-files/IGVFFI6950RMDV/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "6e0d85370882a625df43336145ff6f1b",
    "principal_dimension": "cell",
    "quality_metrics": [
        "/single-cell-rna-seq-quality-metrics/102316ba-22b5-4aa7-8ad9-7f82b93c3183/"
    ],
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2025-04-19T17:52:06.766124+00:00",
    "s3_uri": "s3://igvf-files/2025/04/06/f74cda99-17f6-4744-b97f-37cd9a1c41da/IGVFFI8873RHRT.tar.gz",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_003/igvf_003_Subpool_14_total+core.tar.gz",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "f74cda99-17f6-4744-b97f-37cd9a1c41da",
    "workflow": {
        "@id": "/workflows/IGVFWF6241JYDF/",
        "name": "UCI snRNA-seq workflow"
    }
}