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IGVFFI8767IWEB

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4252LFRU(interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression)
Summary
cell by UMI count in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
hdf5
Content Type
filtered feature barcode matrix
Content Summary
cell by UMI count in filtered feature barcode matrix
Aliases
gary-hon:WTC11_CM_Pilot2_Mini_PB9_PrimaryAnalysis_h5
md5sum
306662b0bad1f1b4ccefc17c1690b049
File Size
674 MB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/mini_cm_pilot_02_inducible/_435-438_WTC11_PB9/_aggr_transcriptome/cm_pilot_mini_02_no_normalization_WTC11_PB9/outs/count/filtered_feature_bc_matrix.h5
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
UMI count

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW438) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW435) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW437) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW436) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

48 items
fastq
reads
Gary Hon, UT
788 MB
validated
fastq
reads
Gary Hon, UT
45 GB
validated
fastq
reads
Gary Hon, UT
4.0 GB
validated
fastq
reads
Gary Hon, UT
417 MB
validated
fastq
reads
Gary Hon, UT
2.8 GB
validated
fastq
reads
Gary Hon, UT
469 MB
validated
fastq
reads
Gary Hon, UT
6.0 GB
validated
fastq
reads
Gary Hon, UT
4.4 GB
validated
fastq
reads
Gary Hon, UT
960 MB
validated
fastq
reads
Gary Hon, UT
395 MB
validated

Files Derived From This File

3 items
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
17 GB
validated
csv
unfiltered local differential expression
unfiltered local differential expression
Gary Hon, UT
6.6 KB
validated
csv
unfiltered global differential expression
unfiltered global differential expression
Gary Hon, UT
383 KB
validated