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IGVFFI8712OENP

released
validated
File Set
IGVFDS1666GZSV(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/1744edca-744a-465d-aacb-afaffa942057/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
d8c9ba155ff46fd89559d75f4cf7eb07
File Size
98 GB
Submitted File Name
DiencephalonPituitary_integrated_processed_annotated.h5ad
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for the annotated by tissue h5ad files
file format specification

Samples

40 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

40 items
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.7 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.7 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.8 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
156 MB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
149 MB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.9 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.8 GB
validated