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IGVFFI8679WKXN

released
validated
File Set
IGVFDS5322ZITQ(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
cool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispri-region3-ipsc-cm-targeted-hicar-rep2-cool
md5sum
53ffc52cf0b3b172cf508804c860715c
File Size
33 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/human/krabregion32.1000.cool

Matrix Details

Principal Dimension
genomic position
Secondary Dimensions
genomic position

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Contact matrix cool files
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
mcool
contact matrix
Charles Gersbach, Duke
157 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
1.7 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke