IGVFFI8624MCFO

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI8624MCFO/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI8624MCFO",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "672b373041137d63f9bc5b4fc7ed8d83",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T23:07:31.759406+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI3252ETYO/",
26        "/sequence-files/IGVFFI2577MOHX/",
27        "/sequence-files/IGVFFI2437MXAC/",
28        "/sequence-files/IGVFFI9978YPRJ/",
29        "/sequence-files/IGVFFI1611BHRS/",
30        "/sequence-files/IGVFFI1607FWXX/",
31        "/sequence-files/IGVFFI3572CIPW/",
32        "/sequence-files/IGVFFI6117RDWF/",
33        "/sequence-files/IGVFFI6858VXBZ/",
34        "/sequence-files/IGVFFI1332HXZY/",
35        "/sequence-files/IGVFFI3603XPSR/",
36        "/sequence-files/IGVFFI2858LAAT/",
37        "/sequence-files/IGVFFI1284EGJC/",
38        "/sequence-files/IGVFFI4631OLIO/",
39        "/sequence-files/IGVFFI4963LZDT/",
40        "/sequence-files/IGVFFI5808DRIB/"
41    ],
42    "file_format": "tar",
43    "file_format_specifications": [
44        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
45    ],
46    "file_set": {
47        "@id": "/analysis-sets/IGVFDS1790VYNE/",
48        "@type": [
49            "AnalysisSet",
50            "FileSet",
51            "Item"
52        ],
53        "accession": "IGVFDS1790VYNE",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM8757EOTF/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM8757EOTF",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
67                ],
68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/NTR_0000646/",
73                        "status": "released",
74                        "term_name": "left cerebral cortex"
75                    },
76                    {
77                        "@id": "/sample-terms/NTR_0000647/",
78                        "status": "released",
79                        "term_name": "right cerebral cortex"
80                    },
81                    {
82                        "@id": "/sample-terms/NTR_0000750/",
83                        "status": "released",
84                        "term_name": "left hippocampal formation"
85                    },
86                    {
87                        "@id": "/sample-terms/NTR_0000751/",
88                        "status": "released",
89                        "term_name": "right hippocampal formation"
90                    },
91                    {
92                        "@id": "/sample-terms/UBERON_0001388/",
93                        "status": "released",
94                        "term_name": "gastrocnemius"
95                    }
96                ],
97                "status": "released",
98                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
99                "taxa": "Mus musculus",
100                "treatments": []
101            }
102        ],
103        "status": "released",
104        "summary": "Parse SPLiT-seq: sparse gene count matrix"
105    },
106    "file_size": 1366913438,
107    "gene_list_for": [],
108    "href": "/matrix-files/IGVFFI8624MCFO/@@download/IGVFFI8624MCFO.tar.gz",
109    "input_file_for": [
110        "/matrix-files/IGVFFI0996MCPQ/",
111        "/matrix-files/IGVFFI1830EGOB/"
112    ],
113    "integrated_in": [],
114    "lab": {
115        "@id": "/labs/ali-mortazavi/",
116        "title": "Ali Mortazavi, UCI"
117    },
118    "loci_list_for": [],
119    "md5sum": "43b4ce92775889a0c4b1fd286071379b",
120    "principal_dimension": "cell",
121    "quality_metrics": [
122        "/single-cell-rna-seq-quality-metrics/2a770835-eadb-498c-9d78-717a9975e146/"
123    ],
124    "reference_files": [
125        "/reference-files/IGVFFI9282QLXO/",
126        "/reference-files/IGVFFI9744VSJF/"
127    ],
128    "release_timestamp": "2025-04-19T04:29:30.462858+00:00",
129    "s3_uri": "s3://igvf-files/2025/04/06/f109a0cd-b6d1-41e3-87c6-bd4399cd6961/IGVFFI8624MCFO.tar.gz",
130    "schema_version": "7",
131    "secondary_dimensions": [
132        "gene"
133    ],
134    "status": "released",
135    "submitted_by": {
136        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
137        "title": "Diane Trout"
138    },
139    "submitted_file_name": "igvf_011/igvf_011_Subpool_6_total+core.tar.gz",
140    "summary": "cell by gene in sparse gene count matrix",
141    "upload_status": "validated",
142    "uuid": "f109a0cd-b6d1-41e3-87c6-bd4399cd6961",
143    "workflow": {
144        "@id": "/workflows/IGVFWF6241JYDF/",
145        "name": "UCI snRNA-seq workflow"
146    }
147}