IGVFFI8589SSBM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI8589SSBM/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI8589SSBM",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "481708a75c06c83e917d23c0367feb53",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T23:11:47.151731+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI8010UCBF/",
26        "/sequence-files/IGVFFI0033UEAZ/"
27    ],
28    "file_format": "tar",
29    "file_format_specifications": [
30        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
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32    "file_set": {
33        "@id": "/analysis-sets/IGVFDS9337VTWE/",
34        "@type": [
35            "AnalysisSet",
36            "FileSet",
37            "Item"
38        ],
39        "accession": "IGVFDS9337VTWE",
40        "file_set_type": "intermediate analysis",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM1388HMEO/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM1388HMEO",
50                "classifications": [
51                    "tissue",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/NTR_0000646/",
59                        "status": "released",
60                        "term_name": "left cerebral cortex"
61                    },
62                    {
63                        "@id": "/sample-terms/NTR_0000647/",
64                        "status": "released",
65                        "term_name": "right cerebral cortex"
66                    },
67                    {
68                        "@id": "/sample-terms/NTR_0000750/",
69                        "status": "released",
70                        "term_name": "left hippocampal formation"
71                    },
72                    {
73                        "@id": "/sample-terms/NTR_0000751/",
74                        "status": "released",
75                        "term_name": "right hippocampal formation"
76                    },
77                    {
78                        "@id": "/sample-terms/UBERON_0001388/",
79                        "status": "released",
80                        "term_name": "gastrocnemius"
81                    }
82                ],
83                "status": "released",
84                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
85                "taxa": "Mus musculus",
86                "treatments": []
87            }
88        ],
89        "status": "released",
90        "summary": "Parse SPLiT-seq: sparse gene count matrix"
91    },
92    "file_size": 231087430,
93    "gene_list_for": [],
94    "href": "/matrix-files/IGVFFI8589SSBM/@@download/IGVFFI8589SSBM.tar.gz",
95    "input_file_for": [
96        "/matrix-files/IGVFFI0996MCPQ/",
97        "/matrix-files/IGVFFI1830EGOB/"
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99    "integrated_in": [],
100    "lab": {
101        "@id": "/labs/ali-mortazavi/",
102        "title": "Ali Mortazavi, UCI"
103    },
104    "loci_list_for": [],
105    "md5sum": "bdc43b05057ca642be756c27f49f5107",
106    "principal_dimension": "cell",
107    "quality_metrics": [
108        "/single-cell-rna-seq-quality-metrics/9cc9bbd8-dc31-4fde-9de4-23ab0cb01571/"
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110    "reference_files": [
111        "/reference-files/IGVFFI9282QLXO/",
112        "/reference-files/IGVFFI9744VSJF/"
113    ],
114    "release_timestamp": "2025-04-19T04:38:41.976670+00:00",
115    "s3_uri": "s3://igvf-files/2025/04/06/8b20537b-74a0-443c-8d12-7aeec1083060/IGVFFI8589SSBM.tar.gz",
116    "schema_version": "7",
117    "secondary_dimensions": [
118        "gene"
119    ],
120    "status": "released",
121    "submitted_by": {
122        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
123        "title": "Diane Trout"
124    },
125    "submitted_file_name": "igvf_011/igvf_011_Subpool_EX_total+core.tar.gz",
126    "summary": "cell by gene in sparse gene count matrix",
127    "upload_status": "validated",
128    "uuid": "8b20537b-74a0-443c-8d12-7aeec1083060",
129    "workflow": {
130        "@id": "/workflows/IGVFWF6241JYDF/",
131        "name": "UCI snRNA-seq workflow"
132    }
133}