IGVFFI8561TMDO

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI8561TMDO/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8561TMDO",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS2500WRRQ_rna_kb_output_folder_tar_gz"
12    ],
13    "analysis_step_version": "/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011986/",
20        "component": "mapping"
21    },
22    "checkfiles_version": "v20",
23    "content_md5sum": "9a63f0cfe21606d59ea599a53a10f954",
24    "content_summary": "cell by gene in comprehensive gene count matrix",
25    "content_type": "comprehensive gene count matrix",
26    "creation_timestamp": "2025-04-01T16:50:01.128410+00:00",
27    "derived_from": [
28        "/sequence-files/IGVFFI5401KJCX/",
29        "/sequence-files/IGVFFI4877DKZW/",
30        "/sequence-files/IGVFFI3909HNZB/",
31        "/sequence-files/IGVFFI0200LBQH/",
32        "/sequence-files/IGVFFI0707UFPZ/",
33        "/sequence-files/IGVFFI3247DZJG/",
34        "/configuration-files/IGVFFI2598WSHP/",
35        "/configuration-files/IGVFFI3123FVDB/",
36        "/configuration-files/IGVFFI2212QVWV/"
37    ],
38    "file_format": "tar",
39    "file_format_specifications": [
40        {
41            "@id": "/documents/19eb87bc-6c88-43cf-b371-c75440db36e6/",
42            "description": "Specification of matrix tar generated by https://github.com/IGVF/single-cell-pipeline"
43        },
44        {
45            "@id": "/documents/2ebce0a7-4990-4d22-8aad-b896f42f49e5/",
46            "description": "Specification of each mtx and txt file in matrix tar file from single cell RNA uniform pipeline"
47        }
48    ],
49    "file_set": {
50        "@id": "/analysis-sets/IGVFDS2500WRRQ/",
51        "@type": [
52            "AnalysisSet",
53            "FileSet",
54            "Item"
55        ],
56        "accession": "IGVFDS2500WRRQ",
57        "data_use_limitation_summaries": [
58            "no certificate"
59        ],
60        "file_set_type": "intermediate analysis",
61        "samples": [
62            {
63                "@id": "/tissues/IGVFSM9503WHHQ/",
64                "@type": [
65                    "Tissue",
66                    "Biosample",
67                    "Sample",
68                    "Item"
69                ],
70                "accession": "IGVFSM9503WHHQ",
71                "classifications": [
72                    "tissue"
73                ],
74                "sample_terms": [
75                    {
76                        "@id": "/sample-terms/UBERON_0000955/",
77                        "status": "released",
78                        "term_name": "brain"
79                    }
80                ],
81                "status": "released",
82                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)",
83                "taxa": "Mus musculus"
84            }
85        ],
86        "status": "released",
87        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
88    },
89    "file_size": 7710586104,
90    "filtered": false,
91    "gene_list_for": [],
92    "href": "/matrix-files/IGVFFI8561TMDO/@@download/IGVFFI8561TMDO.tar.gz",
93    "input_file_for": [],
94    "integrated_in": [],
95    "lab": {
96        "@id": "/labs/jason-buenrostro/",
97        "title": "Jason Buenrostro, Broad"
98    },
99    "loci_list_for": [],
100    "md5sum": "c7da568160df73c11f0cd12a7fe7f682",
101    "principal_dimension": "cell",
102    "quality_metrics": [
103        "/single-cell-rna-seq-quality-metrics/2ac36cdd-a8cd-40ae-be00-305f0920adfa/"
104    ],
105    "reference_files": [
106        "/reference-files/IGVFFI5078MNED/"
107    ],
108    "release_timestamp": "2025-05-07T20:35:07.526913+00:00",
109    "s3_uri": "s3://igvf-files/2025/04/01/444a5609-e596-45e0-88e0-2753619a97ef/IGVFFI8561TMDO.tar.gz",
110    "schema_version": "7",
111    "secondary_dimensions": [
112        "gene"
113    ],
114    "status": "released",
115    "submitted_by": {
116        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
117        "title": "Siddarth Wekhande"
118    },
119    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/37c6f33e-77c3-4424-9360-fe4be37474a2/call-rna/wf_rna/33e7c1df-60d8-4e49-b334-2fa8c15d799a/call-kb/SS-PKR-433.tar.gz",
120    "summary": "unfiltered cell by gene in comprehensive gene count matrix",
121    "upload_status": "validated",
122    "uuid": "444a5609-e596-45e0-88e0-2753619a97ef",
123    "workflow": {
124        "@id": "/workflows/IGVFWF7365VWQV/",
125        "name": "igvf single cell uniform pipeline",
126        "uniform_pipeline": true
127    }
128}