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IGVFFI8534GAEL

released
validated
File Set
IGVFDS2656JJBV(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/1744edca-744a-465d-aacb-afaffa942057/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
0bbf96e5ce588dd7f7eaaf1e18ebf31c
File Size
62 GB
Submitted File Name
Kidney_integrated_processed_annotated.h5ad
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for the annotated by tissue h5ad files
file format specification

Samples

32 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

32 items
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.4 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.7 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.4 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.4 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.3 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.4 GB
validated