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IGVFFI8522GXEK

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6924DJAZ(interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression)
Summary
cell by UMI count in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
hdf5
Content Type
filtered feature barcode matrix
Content Summary
cell by UMI count in filtered feature barcode matrix
Aliases
gary-hon:H9_CM_Pilot2_Mini_Inducible_PrimaryAnalysis_h5
md5sum
7fd187093627f465c9861fce253b00d7
File Size
513 MB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/mini_cm_pilot_02_inducible/_421-424_inducible/_aggr_transcriptome/cm_pilot_mini_02_no_normalization_inducible/outs/count/filtered_feature_bc_matrix.h5

Matrix Details

Principal Dimension
cell
Secondary Dimensions
UMI count

Samples

4 items
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW424), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW423), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW421), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW422), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files Derived From This File

3 items
csv
unfiltered global differential expression
unfiltered global differential expression
Gary Hon, UT
133 KB
invalidated
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
16 GB
validated
csv
unfiltered local differential expression
unfiltered local differential expression
Gary Hon, UT
5.2 KB
invalidated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT