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IGVFFI8487QYZL

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1588TVKF(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by CRISPR guide capture in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
pkl
Content Type
raw feature barcode matrix
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
Aliases
gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis_pkl
md5sum
c4e133e8ead6bb5219dfec323bd796c1
File Size
540 MB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/TF_perturb_seq/_pipeline_reporcessing/_combined_npc/aggr_dataframe/aggr_combined_df_full.pkl
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
CRISPR guide capture

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW281) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW282) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW284) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW283) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
External Lab, Community
55 MB
validated

Files This File Derives From

96 items
fastq
reads
Gary Hon, UT
228 MB
validated
fastq
reads
Gary Hon, UT
217 MB
validated
fastq
reads
Gary Hon, UT
230 MB
validated
fastq
reads
Gary Hon, UT
424 MB
validated
fastq
reads
Gary Hon, UT
305 MB
validated
fastq
reads
Gary Hon, UT
79 MB
validated
fastq
reads
Gary Hon, UT
207 MB
validated
fastq
reads
Gary Hon, UT
732 MB
validated
fastq
reads
Gary Hon, UT
234 MB
validated
fastq
reads
Gary Hon, UT
83 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
17 GB
validated