{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI8363CVXB/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI8363CVXB",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "6f7dc2f2170dd2addd76d62540cba11f",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T22:40:36.414925+00:00",
"derived_from": [
"/sequence-files/IGVFFI1856VHME/",
"/sequence-files/IGVFFI8565UDCI/",
"/sequence-files/IGVFFI5021YJWG/",
"/sequence-files/IGVFFI5574MWHZ/",
"/sequence-files/IGVFFI5294CRXQ/",
"/sequence-files/IGVFFI9153TZNP/",
"/sequence-files/IGVFFI1963GAGB/",
"/sequence-files/IGVFFI6413FLLF/",
"/sequence-files/IGVFFI9843EFCF/",
"/sequence-files/IGVFFI7012ENFU/",
"/sequence-files/IGVFFI7141BRRQ/",
"/sequence-files/IGVFFI8340WUII/",
"/sequence-files/IGVFFI8126GQYM/",
"/sequence-files/IGVFFI1618XYMU/",
"/sequence-files/IGVFFI4648KNLQ/",
"/sequence-files/IGVFFI7380QXCT/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS1040VUIL/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1040VUIL",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2572CRZA/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2572CRZA",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
},
{
"@id": "/sample-terms/UBERON_0002107/",
"status": "released",
"term_name": "liver"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 1504498954,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI8363CVXB/@@download/IGVFFI8363CVXB.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI8712OENP/",
"/matrix-files/IGVFFI1622ZYWL/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "59c32020dd06834cde53364e57a7d3d2",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/53c81b80-d248-4ae4-8b62-42e559f338e0/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T03:12:56.853794+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/5200e114-afbe-4734-991d-805f5abe0bd5/IGVFFI8363CVXB.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_005/igvf_005_Subpool_16_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "5200e114-afbe-4734-991d-805f5abe0bd5",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}