IGVFFI8204RASA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI8204RASA/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8204RASA",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "c0423977c7bd9be6954bfffdbb49b053",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:59:52.479350+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI3084GNHN/",
26        "/sequence-files/IGVFFI3195ZPCF/"
27    ],
28    "file_format": "tar",
29    "file_format_specifications": [
30        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
31    ],
32    "file_set": {
33        "@id": "/analysis-sets/IGVFDS1693CEAJ/",
34        "@type": [
35            "AnalysisSet",
36            "FileSet",
37            "Item"
38        ],
39        "accession": "IGVFDS1693CEAJ",
40        "file_set_type": "intermediate analysis",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM3745KMDW/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM3745KMDW",
50                "classifications": [
51                    "tissue",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0002113/",
59                        "status": "released",
60                        "term_name": "kidney"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0002369/",
64                        "status": "released",
65                        "term_name": "adrenal gland"
66                    }
67                ],
68                "status": "released",
69                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
70                "taxa": "Mus musculus",
71                "treatments": []
72            }
73        ],
74        "status": "released",
75        "summary": "Parse SPLiT-seq: sparse gene count matrix"
76    },
77    "file_size": 242544184,
78    "gene_list_for": [],
79    "href": "/matrix-files/IGVFFI8204RASA/@@download/IGVFFI8204RASA.tar.gz",
80    "input_file_for": [
81        "/matrix-files/IGVFFI5074IKKL/",
82        "/matrix-files/IGVFFI8534GAEL/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ali-mortazavi/",
87        "title": "Ali Mortazavi, UCI"
88    },
89    "loci_list_for": [],
90    "md5sum": "098e797a53582422e73d9277f82820bd",
91    "principal_dimension": "cell",
92    "quality_metrics": [
93        "/single-cell-rna-seq-quality-metrics/67562079-b101-4e05-a1c3-eb90205abef2/"
94    ],
95    "reference_files": [
96        "/reference-files/IGVFFI9282QLXO/",
97        "/reference-files/IGVFFI9744VSJF/"
98    ],
99    "release_timestamp": "2025-04-19T04:14:42.222389+00:00",
100    "s3_uri": "s3://igvf-files/2025/04/06/2371d7c6-4aa0-4354-9e7c-eb379dd5bf71/IGVFFI8204RASA.tar.gz",
101    "schema_version": "7",
102    "secondary_dimensions": [
103        "gene"
104    ],
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
108        "title": "Diane Trout"
109    },
110    "submitted_file_name": "igvf_009/igvf_009_Subpool_EX_total+core.tar.gz",
111    "summary": "cell by gene in sparse gene count matrix",
112    "upload_status": "validated",
113    "uuid": "2371d7c6-4aa0-4354-9e7c-eb379dd5bf71",
114    "workflow": {
115        "@id": "/workflows/IGVFWF6241JYDF/",
116        "name": "UCI snRNA-seq workflow"
117    }
118}