Home

IGVFFI8142SBEI

released
validated
File Set
IGVFDS0718WXPI(SHARE-seq: fragments, sparse gene count matrix)
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:surya-human-organoid-rna-matrix
md5sum
6672db7b863aa8283fc35420d591eef5
File Size
64 MB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/human_organoids.RNA.raw_counts.h5
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens colon epithelial cell organoid induced to colon for 7 days

Reference Files

2 items
fasta
genome reference
GRCh38 genome reference
External Lab, Community
873 MB
validated
gtf
transcriptome reference
GRCh38 GENCODE 43 transcriptome reference
External Lab, Community
53 MB
validated

Files This File Derives From

2 items
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated