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IGVFFI8115NBJO

released
validated
File Set
IGVFDS4769QTGM(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:IGVFDS4769QTGM_matrix_file
md5sum
bfb58932ff34d9966e13ec5d62efad35
File Size
962 MB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/e5388b35-8930-49ab-a59f-e57e72b28278/call-rna/wf_rna/ee10e6d6-0bbd-468a-8de3-f27d3232336b/call-kb/SS-PKR-132.h5ad
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of matrix h5 generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Reference Files

2 items
tar
transcriptome index
GRCm39 GENCODE M36 transcriptome index
External Lab, Community
1.7 GB
validated
tar
genome index
GRCm39 genome index
External Lab, Community
5.3 GB
validated

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.6 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.7 GB
validated