IGVFFI8092YGSW

1{
2    "@context": "/terms/",
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9    "accession": "IGVFFI8092YGSW",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS2500WRRQ_matrix_file"
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13    "analysis_step_version": "/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011986/",
20        "component": "mapping"
21    },
22    "checkfiles_version": "v20",
23    "content_summary": "cell by gene in sparse gene count matrix",
24    "content_type": "sparse gene count matrix",
25    "creation_timestamp": "2025-03-27T00:20:13.530566+00:00",
26    "derived_from": [
27        "/sequence-files/IGVFFI5401KJCX/",
28        "/sequence-files/IGVFFI4877DKZW/",
29        "/sequence-files/IGVFFI3909HNZB/",
30        "/sequence-files/IGVFFI0200LBQH/",
31        "/sequence-files/IGVFFI0707UFPZ/",
32        "/sequence-files/IGVFFI3247DZJG/",
33        "/configuration-files/IGVFFI2598WSHP/",
34        "/configuration-files/IGVFFI3123FVDB/",
35        "/configuration-files/IGVFFI2212QVWV/"
36    ],
37    "file_format": "h5ad",
38    "file_format_specifications": [
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41            "description": "Specification of matrix h5 generated by https://github.com/IGVF/single-cell-pipeline"
42        }
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52        "data_use_limitation_summaries": [
53            "no certificate"
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55        "file_set_type": "intermediate analysis",
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72                        "status": "released",
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76                "status": "released",
77                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)",
78                "taxa": "Mus musculus"
79            }
80        ],
81        "status": "released",
82        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
83    },
84    "file_size": 1241931792,
85    "filtered": false,
86    "gene_list_for": [],
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88    "input_file_for": [],
89    "integrated_in": [],
90    "lab": {
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92        "title": "Jason Buenrostro, Broad"
93    },
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95    "md5sum": "e79105a06cb6f1bdeb4bb23b60bcf299",
96    "principal_dimension": "cell",
97    "quality_metrics": [
98        "/single-cell-rna-seq-quality-metrics/2ac36cdd-a8cd-40ae-be00-305f0920adfa/"
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100    "reference_files": [
101        "/reference-files/IGVFFI5078MNED/",
102        "/reference-files/IGVFFI5593VLWB/"
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104    "release_timestamp": "2025-05-07T20:35:07.446530+00:00",
105    "s3_uri": "s3://igvf-files/2025/03/27/79b657e7-80b9-49b6-82c2-c9cffee47f18/IGVFFI8092YGSW.h5ad",
106    "schema_version": "7",
107    "secondary_dimensions": [
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110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
113        "title": "Siddarth Wekhande"
114    },
115    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/053cebc3-3088-4281-87d1-65fca1fcb4ea/call-rna/wf_rna/d1a40407-23d0-447c-805b-7a9c987f8505/call-kb/SS-PKR-434.h5ad",
116    "summary": "unfiltered cell by gene in sparse gene count matrix",
117    "upload_status": "validated",
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122        "uniform_pipeline": true
123    }
124}