IGVFFI7990AISV

released

validated

File Set

IGVFDS4731QGJR(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

cell by gene in raw feature barcode matrix

Analysis Step Version

/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/

File Format

hdf5

Content Type

raw feature barcode matrix

Content Summary

cell by gene in raw feature barcode matrix

Aliases

ansuman-satpathy:igvf12_raw_rna_counts_10x4

md5sum

ecc34766741a86d235c9b117e144dfc3

File Size

167 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l4_raw_feature_bc_matrix.h5

Checkfiles Version

v14

Attribution

Ansuman Satpathy, Stanford

(

HG011972 — Jesse Engreitz

)

Matrix Details

Principal Dimension

cell

Secondary Dimensions

gene

File Format Specifications

1 item

Page

Description

Type

Download

Preview

Raw RNA count matrix definition for 10x multiome

file format specification

raw_rna_count_marix_format.pdf

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3762JDVU

MultiplexedSample

B cell, bone marrow

multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples