IGVFFI7916RANR

preview
validated
{
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    "accession": "IGVFFI7916RANR",
    "aliases": [
        "gary-hon:CM_Pilot_2_Lenti_RNA_h5ad"
    ],
    "analysis_step_version": "/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/",
    "assay_titles": [
        "Perturb-seq"
    ],
    "audit": {
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            {
                "category": "mismatched status",
                "detail": "Preview matrix file [IGVFFI7916RANR](/matrix-files/IGVFFI7916RANR/) has in progress subobject analysis step version [4cfc022a-ff63-4d13-99f7-257a6bfe4bd7](/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI7916RANR/"
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        ]
    },
    "award": {
        "@id": "/awards/HG011996/",
        "component": "functional characterization"
    },
    "content_summary": "cell by gene expression in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-12-17T22:56:19.790450+00:00",
    "file_format": "h5ad",
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                "status": "preview",
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                    "term_name": "cardiac muscle cell"
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                "taxa": "Homo sapiens"
            },
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                        "@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            },
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                    }
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                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
                "targeted_sample_term": {
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                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            },
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                        "@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
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                    }
                ],
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                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW263), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
                "targeted_sample_term": {
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                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "preview",
        "summary": "interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression"
    },
    "file_size": 20565294501,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI7916RANR/@@download/IGVFFI7916RANR.h5ad",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/gary-hon/",
        "title": "Gary Hon, UT"
    },
    "loci_list_for": [],
    "md5sum": "d9a45b4113a69d726242fc4f80958dec",
    "principal_dimension": "cell",
    "reference_files": [
        "/reference-files/IGVFFI6815WBWB/"
    ],
    "s3_uri": "s3://igvf-files/2024/12/17/89bbc5ca-abb1-40b9-9f69-a1badb4afe0a/IGVFFI7916RANR.h5ad",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene expression"
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
        "title": "Mpathi Nzima"
    },
    "submitted_file_name": "/project/shared/gcrb_igvf/data/shared/CMPILOT2_scRNAseq/H5AD/V0_CM_Pilot#02_Lenti_reprocessed_sgRNACells_filtered_w_embedding_full.h5ad",
    "summary": "cell by gene expression in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "89bbc5ca-abb1-40b9-9f69-a1badb4afe0a"
}