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IGVFFI7871XDSP
IGVFFI7871XDSP
released
validated
Json view
File Set
IGVFDS8508LTFL
(Parse SPLiT-seq)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
24e8177489b5ed35fa5d33e98d463ee8
Content MD5sum
e90ce978069e097436c8ba6ce246be1a
File Size
1.5 GB
Submitted File Name
igvf_004/igvf_004_Subpool_10_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Matrix Details
Principal Dimension
cell
Secondary Dimensions
gene
File Format Specifications
1 item
Page
Description
Type
Download
Standardized File Format
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification
igvf-8cube-rna-seq-matrix-market-counts-description.pdf
Download igvf-8cube-rna-seq-matrix-market-counts-description.pdf
Download igvf-8cube-rna-seq-matrix-market-counts-description.pdf
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4628ZCZK
MultiplexedSample
heart
,
liver
multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples
Reference Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9282QLXO
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
IGVFFI9744VSJF
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated
Files This File Derives From
16 items
1
2
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI0389BKVQ
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI1913DUTP
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI2885EMIE
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI2896HBUH
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
11 GB
validated
IGVFFI3392QATT
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI3910SJYV
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
12 GB
validated
IGVFFI4547WNZJ
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI4907WDAU
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
5.8 GB
validated
IGVFFI5047UEUR
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
12 GB
validated
IGVFFI5636EBPR
IGVFDS7702GNGM
fastq
reads
Ali Mortazavi, UCI
11 GB
validated
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI1622ZYWL
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
54 GB
validated
IGVFFI6950RMDV
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
23 GB
validated