Home

IGVFFI7766LZDD

released
validated
File Set
IGVFDS9170BNTS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf3_raw_rna_counts_10x4
md5sum
665f457172b5d091bf8b3e8a52a55839
File Size
91 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf3/e3l4_raw_feature_bc_matrix.h5
Checkfiles Version
v14

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.9 GB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford