{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI7586HWIH/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI7586HWIH",
"aliases": [
"gary-hon:WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis_h5"
],
"analysis_step_version": "/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/",
"assay_titles": [
"Perturb-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview matrix file [IGVFFI7586HWIH](/matrix-files/IGVFFI7586HWIH/) has in progress subobject analysis step version [65c095ee-8330-48d0-bc03-d930326fe393](/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI7586HWIH/"
}
]
},
"award": {
"@id": "/awards/HG011996/",
"component": "functional characterization"
},
"content_summary": "cell by UMI count in filtered feature barcode matrix",
"content_type": "filtered feature barcode matrix",
"creation_timestamp": "2024-12-17T23:40:29.786979+00:00",
"file_format": "hdf5",
"file_set": {
"@id": "/analysis-sets/IGVFDS7340YDHF/",
"accession": "IGVFDS7340YDHF",
"file_set_type": "principal analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9411HZLU/",
"accession": "IGVFSM9411HZLU",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
"modality": "interference",
"status": "preview",
"summary": "CRISPRi Sp-dCas9"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "preview",
"summary": "GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW288), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1153INDY/",
"accession": "IGVFSM1153INDY",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
"modality": "interference",
"status": "preview",
"summary": "CRISPRi Sp-dCas9"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "preview",
"summary": "GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW287), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2726ORRN/",
"accession": "IGVFSM2726ORRN",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
"modality": "interference",
"status": "preview",
"summary": "CRISPRi Sp-dCas9"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "preview",
"summary": "GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW286), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1597KVRS/",
"accession": "IGVFSM1597KVRS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
"modality": "interference",
"status": "preview",
"summary": "CRISPRi Sp-dCas9"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "preview",
"summary": "GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW289), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "preview",
"summary": "interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression"
},
"file_size": 428983756,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI7586HWIH/@@download/IGVFFI7586HWIH.h5",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/gary-hon/",
"title": "Gary Hon, UT"
},
"loci_list_for": [],
"md5sum": "5d34f695d2d03aa075c298ebca3d5348",
"principal_dimension": "cell",
"reference_files": [
"/reference-files/IGVFFI6815WBWB/"
],
"s3_uri": "s3://igvf-files/2024/12/17/b9815896-8cc7-4e7c-9b25-48e50f636ca2/IGVFFI7586HWIH.h5",
"schema_version": "7",
"secondary_dimensions": [
"UMI count"
],
"status": "preview",
"submitted_by": {
"@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
"title": "Mpathi Nzima"
},
"submitted_file_name": "/project/GCRB/Hon_lab/s215194/Single_Cell/TF_perturb_seq/_pipeline_reporcessing/_combined_ipsc/aggr_transciptome/TF_perturbseq_ipsc/outs/count/filtered_feature_bc_matrix.h5",
"summary": "cell by UMI count in filtered feature barcode matrix",
"upload_status": "validated",
"uuid": "b9815896-8cc7-4e7c-9b25-48e50f636ca2"
}