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IGVFFI7562KOSH

released
validated
File Set
IGVFDS8591YLLY(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
a5a31f965f648b42b8d34ce4487efbfd
Content MD5sum
5b5d1d0ff961d8066eb1435cc9e3c63d
File Size
1.1 GB
Submitted File Name
igvf_003/igvf_003_Subpool_12_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

16 items
fastq
reads
Ali Mortazavi, UCI
5.9 GB
validated
fastq
reads
Ali Mortazavi, UCI
10 GB
validated
fastq
reads
Ali Mortazavi, UCI
6.0 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.9 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.9 GB
validated
fastq
reads
Ali Mortazavi, UCI
11 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
6.0 GB
validated

Files Derived From This File

2 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
81 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
23 GB
validated