IGVFFI7458POPP

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7458POPP/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
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10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "490f5c1b12de3b803ef434233a7968e7",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:25:39.103689+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI0354NDEN/",
26        "/sequence-files/IGVFFI0946ORGQ/",
27        "/sequence-files/IGVFFI4515MTQQ/",
28        "/sequence-files/IGVFFI1962HYZW/",
29        "/sequence-files/IGVFFI7678FQSV/",
30        "/sequence-files/IGVFFI9112HPLS/",
31        "/sequence-files/IGVFFI8584EOTZ/",
32        "/sequence-files/IGVFFI6776CKEF/",
33        "/sequence-files/IGVFFI1681ELEM/",
34        "/sequence-files/IGVFFI7382TXNK/",
35        "/sequence-files/IGVFFI4237AZKH/",
36        "/sequence-files/IGVFFI9420WWQA/",
37        "/sequence-files/IGVFFI3606DSIR/",
38        "/sequence-files/IGVFFI0541BFYD/",
39        "/sequence-files/IGVFFI1455UCVH/",
40        "/sequence-files/IGVFFI5078LLAB/",
41        "/sequence-files/IGVFFI8639OTPV/",
42        "/sequence-files/IGVFFI5879FSBN/"
43    ],
44    "file_format": "tar",
45    "file_format_specifications": [
46        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
47    ],
48    "file_set": {
49        "@id": "/analysis-sets/IGVFDS3833SAOP/",
50        "@type": [
51            "AnalysisSet",
52            "FileSet",
53            "Item"
54        ],
55        "accession": "IGVFDS3833SAOP",
56        "file_set_type": "intermediate analysis",
57        "samples": [
58            {
59                "@id": "/multiplexed-samples/IGVFSM3444OJWO/",
60                "@type": [
61                    "MultiplexedSample",
62                    "Sample",
63                    "Item"
64                ],
65                "accession": "IGVFSM3444OJWO",
66                "classifications": [
67                    "tissue",
68                    "multiplexed sample"
69                ],
70                "disease_terms": [],
71                "modifications": [],
72                "sample_terms": [
73                    {
74                        "@id": "/sample-terms/NTR_0000646/",
75                        "status": "released",
76                        "term_name": "left cerebral cortex"
77                    },
78                    {
79                        "@id": "/sample-terms/NTR_0000647/",
80                        "status": "released",
81                        "term_name": "right cerebral cortex"
82                    },
83                    {
84                        "@id": "/sample-terms/NTR_0000750/",
85                        "status": "released",
86                        "term_name": "left hippocampal formation"
87                    },
88                    {
89                        "@id": "/sample-terms/NTR_0000751/",
90                        "status": "released",
91                        "term_name": "right hippocampal formation"
92                    },
93                    {
94                        "@id": "/sample-terms/UBERON_0000948/",
95                        "status": "released",
96                        "term_name": "heart"
97                    }
98                ],
99                "status": "released",
100                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples",
101                "taxa": "Mus musculus",
102                "treatments": []
103            }
104        ],
105        "status": "released",
106        "summary": "Parse SPLiT-seq: sparse gene count matrix"
107    },
108    "file_size": 1229553673,
109    "gene_list_for": [],
110    "href": "/matrix-files/IGVFFI7458POPP/@@download/IGVFFI7458POPP.tar.gz",
111    "input_file_for": [
112        "/matrix-files/IGVFFI0996MCPQ/",
113        "/matrix-files/IGVFFI6950RMDV/"
114    ],
115    "integrated_in": [],
116    "lab": {
117        "@id": "/labs/ali-mortazavi/",
118        "title": "Ali Mortazavi, UCI"
119    },
120    "loci_list_for": [],
121    "md5sum": "a7da4cad868b1fc02b732ad00cd3b48c",
122    "principal_dimension": "cell",
123    "quality_metrics": [
124        "/single-cell-rna-seq-quality-metrics/53e4378c-ca5c-407d-988c-dbb1188e16da/"
125    ],
126    "reference_files": [
127        "/reference-files/IGVFFI9282QLXO/",
128        "/reference-files/IGVFFI9744VSJF/"
129    ],
130    "release_timestamp": "2025-04-19T17:42:36.628156+00:00",
131    "s3_uri": "s3://igvf-files/2025/04/06/c8a5633e-8eea-40b2-8d97-9baf39c4144f/IGVFFI7458POPP.tar.gz",
132    "schema_version": "7",
133    "secondary_dimensions": [
134        "gene"
135    ],
136    "status": "released",
137    "submitted_by": {
138        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
139        "title": "Diane Trout"
140    },
141    "submitted_file_name": "igvf_003/igvf_003_Subpool_3_total+core.tar.gz",
142    "summary": "cell by gene in sparse gene count matrix",
143    "upload_status": "validated",
144    "uuid": "c8a5633e-8eea-40b2-8d97-9baf39c4144f",
145    "workflow": {
146        "@id": "/workflows/IGVFWF6241JYDF/",
147        "name": "UCI snRNA-seq workflow"
148    }
149}