IGVFFI7339SXFR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7339SXFR/",
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10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "7608125eabf6562b23c399e0ee5705a6",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:35:05.734870+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI2940UDMA/",
26        "/sequence-files/IGVFFI2012WHAP/"
27    ],
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29    "file_format_specifications": [
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36            "FileSet",
37            "Item"
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39        "accession": "IGVFDS0427CMBD",
40        "file_set_type": "intermediate analysis",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM8967MWWN/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM8967MWWN",
50                "classifications": [
51                    "tissue",
52                    "multiplexed sample"
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54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0000948/",
59                        "status": "released",
60                        "term_name": "heart"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0002107/",
64                        "status": "released",
65                        "term_name": "liver"
66                    }
67                ],
68                "status": "released",
69                "summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
70                "taxa": "Mus musculus",
71                "treatments": []
72            }
73        ],
74        "status": "released",
75        "summary": "Parse SPLiT-seq: sparse gene count matrix"
76    },
77    "file_size": 150174405,
78    "gene_list_for": [],
79    "href": "/matrix-files/IGVFFI7339SXFR/@@download/IGVFFI7339SXFR.tar.gz",
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81        "/matrix-files/IGVFFI6950RMDV/",
82        "/matrix-files/IGVFFI1622ZYWL/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ali-mortazavi/",
87        "title": "Ali Mortazavi, UCI"
88    },
89    "loci_list_for": [],
90    "md5sum": "782b9cc6906d568cf87892806108cb03",
91    "principal_dimension": "cell",
92    "quality_metrics": [
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95    "reference_files": [
96        "/reference-files/IGVFFI9282QLXO/",
97        "/reference-files/IGVFFI9744VSJF/"
98    ],
99    "release_timestamp": "2025-04-19T02:55:54.465409+00:00",
100    "s3_uri": "s3://igvf-files/2025/04/06/206ffa8e-8174-4ca1-bb3d-f986483247a6/IGVFFI7339SXFR.tar.gz",
101    "schema_version": "7",
102    "secondary_dimensions": [
103        "gene"
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105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
108        "title": "Diane Trout"
109    },
110    "submitted_file_name": "igvf_004/igvf_004_Subpool_EX_total+core.tar.gz",
111    "summary": "cell by gene in sparse gene count matrix",
112    "upload_status": "validated",
113    "uuid": "206ffa8e-8174-4ca1-bb3d-f986483247a6",
114    "workflow": {
115        "@id": "/workflows/IGVFWF6241JYDF/",
116        "name": "UCI snRNA-seq workflow"
117    }
118}