IGVFFI7332UUZE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7332UUZE/",
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5        "MatrixFile",
6        "File",
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9    "accession": "IGVFFI7332UUZE",
10    "aliases": [
11        "ansuman-satpathy:igvf12_raw_rna_counts_10x1"
12    ],
13    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {
18        "INTERNAL_ACTION": [
19            {
20                "category": "mismatched status",
21                "detail": "Released matrix file [IGVFFI7332UUZE](/matrix-files/IGVFFI7332UUZE/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
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23                "level_name": "INTERNAL_ACTION",
24                "name": "audit_item_status",
25                "path": "/matrix-files/IGVFFI7332UUZE/"
26            },
27            {
28                "category": "mismatched status",
29                "detail": "Released matrix file [IGVFFI7332UUZE](/matrix-files/IGVFFI7332UUZE/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
30                "level": 30,
31                "level_name": "INTERNAL_ACTION",
32                "name": "audit_item_status",
33                "path": "/matrix-files/IGVFFI7332UUZE/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011972/",
39        "component": "functional characterization"
40    },
41    "checkfiles_version": "v14",
42    "content_summary": "cell by gene in raw feature barcode matrix",
43    "content_type": "raw feature barcode matrix",
44    "creation_timestamp": "2025-01-28T23:06:55.795503+00:00",
45    "derived_from": [
46        "/sequence-files/IGVFFI4525KLCR/",
47        "/sequence-files/IGVFFI3382QKPO/",
48        "/sequence-files/IGVFFI3972RNEO/",
49        "/sequence-files/IGVFFI1319TIZE/",
50        "/sequence-files/IGVFFI2703RDLU/",
51        "/sequence-files/IGVFFI6249BQWN/",
52        "/sequence-files/IGVFFI5594WHXH/",
53        "/sequence-files/IGVFFI5796UGUZ/",
54        "/sequence-files/IGVFFI8982TYLB/",
55        "/sequence-files/IGVFFI4234TVID/",
56        "/sequence-files/IGVFFI8982IKTF/",
57        "/sequence-files/IGVFFI8874CRTX/",
58        "/sequence-files/IGVFFI2770ZRBT/",
59        "/sequence-files/IGVFFI5811WYPE/",
60        "/sequence-files/IGVFFI4415FEWA/",
61        "/sequence-files/IGVFFI1378OECH/",
62        "/sequence-files/IGVFFI3214RTBN/",
63        "/sequence-files/IGVFFI3303ZBHR/",
64        "/sequence-files/IGVFFI7047MHFI/",
65        "/sequence-files/IGVFFI1948ZHFI/",
66        "/sequence-files/IGVFFI4793EVSD/",
67        "/sequence-files/IGVFFI0816CKYF/",
68        "/sequence-files/IGVFFI9249CJKR/",
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82            "AnalysisSet",
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84            "Item"
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86        "accession": "IGVFDS0793KZKS",
87        "file_set_type": "intermediate analysis",
88        "samples": [
89            {
90                "@id": "/multiplexed-samples/IGVFSM3641EGVH/",
91                "@type": [
92                    "MultiplexedSample",
93                    "Sample",
94                    "Item"
95                ],
96                "accession": "IGVFSM3641EGVH",
97                "classifications": [
98                    "differentiated cell specimen",
99                    "tissue",
100                    "multiplexed sample"
101                ],
102                "disease_terms": [],
103                "modifications": [],
104                "sample_terms": [
105                    {
106                        "@id": "/sample-terms/CL_0000236/",
107                        "status": "released",
108                        "term_name": "B cell"
109                    },
110                    {
111                        "@id": "/sample-terms/UBERON_0002371/",
112                        "status": "released",
113                        "term_name": "bone marrow"
114                    }
115                ],
116                "status": "released",
117                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
118                "taxa": "Homo sapiens",
119                "treatments": []
120            }
121        ],
122        "status": "released",
123        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
124    },
125    "file_size": 158105339,
126    "gene_list_for": [],
127    "href": "/matrix-files/IGVFFI7332UUZE/@@download/IGVFFI7332UUZE.h5",
128    "input_file_for": [],
129    "integrated_in": [],
130    "lab": {
131        "@id": "/labs/ansuman-satpathy/",
132        "title": "Ansuman Satpathy, Stanford"
133    },
134    "loci_list_for": [],
135    "md5sum": "f562a8b652a5c28f44d8593a99583600",
136    "principal_dimension": "cell",
137    "quality_metrics": [],
138    "reference_files": [
139        "/reference-files/IGVFFI8311QXYM/",
140        "/reference-files/IGVFFI3944QOJF/"
141    ],
142    "release_timestamp": "2025-03-22T00:41:55.672777+00:00",
143    "s3_uri": "s3://igvf-files/2025/01/28/42c21b7d-ada7-46ff-9859-73b9306d38f0/IGVFFI7332UUZE.h5",
144    "schema_version": "7",
145    "secondary_dimensions": [
146        "gene"
147    ],
148    "status": "released",
149    "submitted_by": {
150        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
151        "title": "Christopher Mcginnis"
152    },
153    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l1_raw_feature_bc_matrix.h5",
154    "summary": "cell by gene in raw feature barcode matrix",
155    "upload_status": "validated",
156    "uuid": "42c21b7d-ada7-46ff-9859-73b9306d38f0",
157    "workflow": {
158        "@id": "/workflows/IGVFWF1453HVEC/",
159        "name": "Satpathy Cell Ranger",
160        "uniform_pipeline": false
161    }
162}