IGVFFI7280HGJL

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7280HGJL/",
4    "@type": [
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6        "File",
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9    "accession": "IGVFFI7280HGJL",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "14198f27619c0c3901e1c0a7f437995b",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T23:00:02.439892+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI5161IATP/",
26        "/sequence-files/IGVFFI1118SRPZ/",
27        "/sequence-files/IGVFFI5158BROQ/",
28        "/sequence-files/IGVFFI7276HMMQ/",
29        "/sequence-files/IGVFFI8036ADLG/",
30        "/sequence-files/IGVFFI8608VYRJ/",
31        "/sequence-files/IGVFFI2638AWAU/",
32        "/sequence-files/IGVFFI8955VRHU/",
33        "/sequence-files/IGVFFI4161IRNK/",
34        "/sequence-files/IGVFFI3254WBTM/",
35        "/sequence-files/IGVFFI8261OYCW/",
36        "/sequence-files/IGVFFI2939VXUJ/",
37        "/sequence-files/IGVFFI6464GRYZ/",
38        "/sequence-files/IGVFFI2775QXAW/",
39        "/sequence-files/IGVFFI6743VKTD/",
40        "/sequence-files/IGVFFI5845KZHC/"
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50            "FileSet",
51            "Item"
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53        "accession": "IGVFDS9808SXWJ",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM9053HKTX/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM9053HKTX",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
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68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0001388/",
73                        "status": "released",
74                        "term_name": "gastrocnemius"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002113/",
78                        "status": "released",
79                        "term_name": "kidney"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq: sparse gene count matrix"
90    },
91    "file_size": 1316403582,
92    "gene_list_for": [],
93    "href": "/matrix-files/IGVFFI7280HGJL/@@download/IGVFFI7280HGJL.tar.gz",
94    "input_file_for": [
95        "/matrix-files/IGVFFI1830EGOB/",
96        "/matrix-files/IGVFFI8534GAEL/"
97    ],
98    "integrated_in": [],
99    "lab": {
100        "@id": "/labs/ali-mortazavi/",
101        "title": "Ali Mortazavi, UCI"
102    },
103    "loci_list_for": [],
104    "md5sum": "8c60df9e5b5307b9c82c5fba03ac86d1",
105    "principal_dimension": "cell",
106    "quality_metrics": [
107        "/single-cell-rna-seq-quality-metrics/529095dd-945c-4e93-917d-1979e4fa8459/"
108    ],
109    "reference_files": [
110        "/reference-files/IGVFFI9282QLXO/",
111        "/reference-files/IGVFFI9744VSJF/"
112    ],
113    "release_timestamp": "2025-04-19T04:15:42.494691+00:00",
114    "s3_uri": "s3://igvf-files/2025/04/06/97e90de8-7867-4897-9b49-0c1d08ab74b6/IGVFFI7280HGJL.tar.gz",
115    "schema_version": "7",
116    "secondary_dimensions": [
117        "gene"
118    ],
119    "status": "released",
120    "submitted_by": {
121        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
122        "title": "Diane Trout"
123    },
124    "submitted_file_name": "igvf_010/igvf_010_Subpool_2_total+core.tar.gz",
125    "summary": "cell by gene in sparse gene count matrix",
126    "upload_status": "validated",
127    "uuid": "97e90de8-7867-4897-9b49-0c1d08ab74b6",
128    "workflow": {
129        "@id": "/workflows/IGVFWF6241JYDF/",
130        "name": "UCI snRNA-seq workflow"
131    }
132}