IGVFFI7100DGNS

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7100DGNS/",
4    "@type": [
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6        "File",
7        "Item"
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9    "accession": "IGVFFI7100DGNS",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "7896da07aeba64e1ccec303e06228ca7",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:54:32.461945+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI9224ZULD/",
26        "/sequence-files/IGVFFI1700IFDP/",
27        "/sequence-files/IGVFFI9669IGWU/",
28        "/sequence-files/IGVFFI3091LWOA/",
29        "/sequence-files/IGVFFI4949BYTU/",
30        "/sequence-files/IGVFFI5303NFQW/",
31        "/sequence-files/IGVFFI1911AHYA/",
32        "/sequence-files/IGVFFI9635RIFE/",
33        "/sequence-files/IGVFFI7825JSNX/",
34        "/sequence-files/IGVFFI9902EDHA/",
35        "/sequence-files/IGVFFI7233ALUK/",
36        "/sequence-files/IGVFFI8922JMFU/",
37        "/sequence-files/IGVFFI8739KMUG/",
38        "/sequence-files/IGVFFI3129LKQU/",
39        "/sequence-files/IGVFFI3463YQPR/",
40        "/sequence-files/IGVFFI6047ZBMM/",
41        "/sequence-files/IGVFFI0712FKZO/",
42        "/sequence-files/IGVFFI1571WDUD/"
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44    "file_format": "tar",
45    "file_format_specifications": [
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50        "@type": [
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52            "FileSet",
53            "Item"
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55        "accession": "IGVFDS7181DOOU",
56        "file_set_type": "intermediate analysis",
57        "samples": [
58            {
59                "@id": "/multiplexed-samples/IGVFSM9611AGDB/",
60                "@type": [
61                    "MultiplexedSample",
62                    "Sample",
63                    "Item"
64                ],
65                "accession": "IGVFSM9611AGDB",
66                "classifications": [
67                    "tissue",
68                    "multiplexed sample"
69                ],
70                "disease_terms": [],
71                "modifications": [],
72                "sample_terms": [
73                    {
74                        "@id": "/sample-terms/UBERON_0002113/",
75                        "status": "released",
76                        "term_name": "kidney"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0002369/",
80                        "status": "released",
81                        "term_name": "adrenal gland"
82                    }
83                ],
84                "status": "released",
85                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
86                "taxa": "Mus musculus",
87                "treatments": []
88            }
89        ],
90        "status": "released",
91        "summary": "Parse SPLiT-seq: sparse gene count matrix"
92    },
93    "file_size": 1480966201,
94    "gene_list_for": [],
95    "href": "/matrix-files/IGVFFI7100DGNS/@@download/IGVFFI7100DGNS.tar.gz",
96    "input_file_for": [
97        "/matrix-files/IGVFFI5074IKKL/",
98        "/matrix-files/IGVFFI8534GAEL/"
99    ],
100    "integrated_in": [],
101    "lab": {
102        "@id": "/labs/ali-mortazavi/",
103        "title": "Ali Mortazavi, UCI"
104    },
105    "loci_list_for": [],
106    "md5sum": "324ac68ac1bc700be8b690bdbb751a39",
107    "principal_dimension": "cell",
108    "quality_metrics": [
109        "/single-cell-rna-seq-quality-metrics/440700cf-7b05-4fad-a050-78a85a90e8a9/"
110    ],
111    "reference_files": [
112        "/reference-files/IGVFFI9282QLXO/",
113        "/reference-files/IGVFFI9744VSJF/"
114    ],
115    "release_timestamp": "2025-04-19T18:00:39.293352+00:00",
116    "s3_uri": "s3://igvf-files/2025/04/06/93ac4ef4-02f7-46d6-a72c-4de03066aaad/IGVFFI7100DGNS.tar.gz",
117    "schema_version": "7",
118    "secondary_dimensions": [
119        "gene"
120    ],
121    "status": "released",
122    "submitted_by": {
123        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
124        "title": "Diane Trout"
125    },
126    "submitted_file_name": "igvf_009/igvf_009_Subpool_2_total+core.tar.gz",
127    "summary": "cell by gene in sparse gene count matrix",
128    "upload_status": "validated",
129    "uuid": "93ac4ef4-02f7-46d6-a72c-4de03066aaad",
130    "workflow": {
131        "@id": "/workflows/IGVFWF6241JYDF/",
132        "name": "UCI snRNA-seq workflow"
133    }
134}