IGVFFI7014GAGP

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI7014GAGP/",
4    "@type": [
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9    "accession": "IGVFFI7014GAGP",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "0bd8788d11385eaf430e54bf83da0fe0",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T23:05:28.571734+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI3980HFTD/",
26        "/sequence-files/IGVFFI9749QLLT/",
27        "/sequence-files/IGVFFI2014OTGI/",
28        "/sequence-files/IGVFFI1461KJEB/",
29        "/sequence-files/IGVFFI9020MSYE/",
30        "/sequence-files/IGVFFI6300NDVK/",
31        "/sequence-files/IGVFFI2554WHLK/",
32        "/sequence-files/IGVFFI2640GXSC/",
33        "/sequence-files/IGVFFI9028PLYA/",
34        "/sequence-files/IGVFFI7551EVMC/",
35        "/sequence-files/IGVFFI6077TAFK/",
36        "/sequence-files/IGVFFI5862IXNW/",
37        "/sequence-files/IGVFFI1595XDSS/",
38        "/sequence-files/IGVFFI6299LPOW/",
39        "/sequence-files/IGVFFI6101MABS/",
40        "/sequence-files/IGVFFI4416XQBC/",
41        "/sequence-files/IGVFFI6011STVN/",
42        "/sequence-files/IGVFFI1106RQWI/"
43    ],
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49        "@id": "/analysis-sets/IGVFDS3341LPJN/",
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55        "accession": "IGVFDS3341LPJN",
56        "file_set_type": "intermediate analysis",
57        "samples": [
58            {
59                "@id": "/multiplexed-samples/IGVFSM2772WEJT/",
60                "@type": [
61                    "MultiplexedSample",
62                    "Sample",
63                    "Item"
64                ],
65                "accession": "IGVFSM2772WEJT",
66                "classifications": [
67                    "tissue",
68                    "multiplexed sample"
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70                "disease_terms": [],
71                "modifications": [],
72                "sample_terms": [
73                    {
74                        "@id": "/sample-terms/UBERON_0001388/",
75                        "status": "released",
76                        "term_name": "gastrocnemius"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0002113/",
80                        "status": "released",
81                        "term_name": "kidney"
82                    }
83                ],
84                "status": "released",
85                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples",
86                "taxa": "Mus musculus",
87                "treatments": []
88            }
89        ],
90        "status": "released",
91        "summary": "Parse SPLiT-seq: sparse gene count matrix"
92    },
93    "file_size": 1612135673,
94    "gene_list_for": [],
95    "href": "/matrix-files/IGVFFI7014GAGP/@@download/IGVFFI7014GAGP.tar.gz",
96    "input_file_for": [
97        "/matrix-files/IGVFFI1830EGOB/",
98        "/matrix-files/IGVFFI8534GAEL/"
99    ],
100    "integrated_in": [],
101    "lab": {
102        "@id": "/labs/ali-mortazavi/",
103        "title": "Ali Mortazavi, UCI"
104    },
105    "loci_list_for": [],
106    "md5sum": "5b1aef1a0c6a95cadae00790c7628234",
107    "principal_dimension": "cell",
108    "quality_metrics": [
109        "/single-cell-rna-seq-quality-metrics/d4f197e5-1597-4de6-8986-4e5b392c603d/"
110    ],
111    "reference_files": [
112        "/reference-files/IGVFFI9282QLXO/",
113        "/reference-files/IGVFFI9744VSJF/"
114    ],
115    "release_timestamp": "2025-04-19T04:25:53.569987+00:00",
116    "s3_uri": "s3://igvf-files/2025/04/06/e58ec0ce-17d7-4346-90a7-142df7e10c92/IGVFFI7014GAGP.tar.gz",
117    "schema_version": "7",
118    "secondary_dimensions": [
119        "gene"
120    ],
121    "status": "released",
122    "submitted_by": {
123        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
124        "title": "Diane Trout"
125    },
126    "submitted_file_name": "igvf_010/igvf_010_Subpool_16_total+core.tar.gz",
127    "summary": "cell by gene in sparse gene count matrix",
128    "upload_status": "validated",
129    "uuid": "e58ec0ce-17d7-4346-90a7-142df7e10c92",
130    "workflow": {
131        "@id": "/workflows/IGVFWF6241JYDF/",
132        "name": "UCI snRNA-seq workflow"
133    }
134}