IGVFFI6973SBDI

preview
validated
{
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    "accession": "IGVFFI6973SBDI",
    "aliases": [
        "gary-hon:CM_Pilot_2_Lenti_RNA_h5"
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    "analysis_step_version": "/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/",
    "assay_titles": [
        "Perturb-seq"
    ],
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                "category": "mismatched status",
                "detail": "Preview matrix file [IGVFFI6973SBDI](/matrix-files/IGVFFI6973SBDI/) has in progress subobject analysis step version [65c095ee-8330-48d0-bc03-d930326fe393](/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/).",
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                "path": "/matrix-files/IGVFFI6973SBDI/"
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        ]
    },
    "award": {
        "@id": "/awards/HG011996/",
        "component": "functional characterization"
    },
    "content_summary": "cell by UMI count in filtered feature barcode matrix",
    "content_type": "filtered feature barcode matrix",
    "creation_timestamp": "2024-12-17T23:46:30.308297+00:00",
    "file_format": "hdf5",
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                        "@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                "targeted_sample_term": {
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                },
                "taxa": "Homo sapiens"
            },
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                    }
                ],
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                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW265), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
                "targeted_sample_term": {
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                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "preview",
        "summary": "interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression"
    },
    "file_size": 443421981,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI6973SBDI/@@download/IGVFFI6973SBDI.h5",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/gary-hon/",
        "title": "Gary Hon, UT"
    },
    "loci_list_for": [],
    "md5sum": "f5c649b116aca231c7bef53c557f9861",
    "principal_dimension": "cell",
    "reference_files": [
        "/reference-files/IGVFFI6815WBWB/"
    ],
    "s3_uri": "s3://igvf-files/2024/12/17/dba2c5ff-793d-499d-ae31-0059d5719b5c/IGVFFI6973SBDI.h5",
    "schema_version": "7",
    "secondary_dimensions": [
        "UMI count"
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
        "title": "Mpathi Nzima"
    },
    "submitted_file_name": "/project/GCRB/Hon_lab/s215194/Single_Cell/Process_scRNA_CMPILOT2_Lenti/_pipeline_reprocessing/_all_lanes_combined/aggr_transcriptome/CMPILOT2_Lenti_MN/outs/count/filtered_feature_bc_matrix.h5",
    "summary": "cell by UMI count in filtered feature barcode matrix",
    "upload_status": "validated",
    "uuid": "dba2c5ff-793d-499d-ae31-0059d5719b5c"
}