{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI6705BBTN/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI6705BBTN",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "cf804df4226a351aef774788178a4cc0",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T22:47:31.551197+00:00",
"derived_from": [
"/sequence-files/IGVFFI8181IJWH/",
"/sequence-files/IGVFFI0863AUJY/",
"/sequence-files/IGVFFI6867FJXY/",
"/sequence-files/IGVFFI8122WWIK/",
"/sequence-files/IGVFFI5372IKGT/",
"/sequence-files/IGVFFI0275ABWV/",
"/sequence-files/IGVFFI1069YSNT/",
"/sequence-files/IGVFFI2463CHBS/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS4363PYFA/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4363PYFA",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8971YMTF/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8971YMTF",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000473/",
"status": "released",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"status": "released",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"status": "released",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"status": "released",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 1616486194,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI6705BBTN/@@download/IGVFFI6705BBTN.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI5074IKKL/",
"/matrix-files/IGVFFI0091ZNMZ/",
"/matrix-files/IGVFFI1152NRZL/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "f7ef28d6406ec0e236c2507bda1b9b79",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/c2c3e088-0681-4e9a-a482-58018c1a6d03/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T17:58:47.830193+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/7d699020-271d-4bd7-ad44-4dd9ad20ff55/IGVFFI6705BBTN.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_008/igvf_008_Subpool_2_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "7d699020-271d-4bd7-ad44-4dd9ad20ff55",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}