IGVFFI6422HBLC

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI6422HBLC/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI6422HBLC",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "6de5408c82a698454d8c342db95b4fe3",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T23:05:04.764114+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI2262GARY/",
26        "/sequence-files/IGVFFI9485UNYH/",
27        "/sequence-files/IGVFFI3478TBFW/",
28        "/sequence-files/IGVFFI5838UHEO/",
29        "/sequence-files/IGVFFI4440VAIU/",
30        "/sequence-files/IGVFFI3227HKGB/",
31        "/sequence-files/IGVFFI0939JEJI/",
32        "/sequence-files/IGVFFI3300QTVQ/",
33        "/sequence-files/IGVFFI9590FJFU/",
34        "/sequence-files/IGVFFI6758IVQX/",
35        "/sequence-files/IGVFFI0065PXLH/",
36        "/sequence-files/IGVFFI5190KSWS/",
37        "/sequence-files/IGVFFI2061MHLW/",
38        "/sequence-files/IGVFFI7584PRYR/",
39        "/sequence-files/IGVFFI0735XDYL/",
40        "/sequence-files/IGVFFI3457PMNQ/"
41    ],
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48        "@type": [
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50            "FileSet",
51            "Item"
52        ],
53        "accession": "IGVFDS4129WCZB",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM4001TDPF/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM4001TDPF",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
67                ],
68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0001388/",
73                        "status": "released",
74                        "term_name": "gastrocnemius"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002113/",
78                        "status": "released",
79                        "term_name": "kidney"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq: sparse gene count matrix"
90    },
91    "file_size": 1437212216,
92    "gene_list_for": [],
93    "href": "/matrix-files/IGVFFI6422HBLC/@@download/IGVFFI6422HBLC.tar.gz",
94    "input_file_for": [
95        "/matrix-files/IGVFFI1830EGOB/",
96        "/matrix-files/IGVFFI8534GAEL/"
97    ],
98    "integrated_in": [],
99    "lab": {
100        "@id": "/labs/ali-mortazavi/",
101        "title": "Ali Mortazavi, UCI"
102    },
103    "loci_list_for": [],
104    "md5sum": "ffa909f91916ce43baf6926b7b51b529",
105    "principal_dimension": "cell",
106    "quality_metrics": [
107        "/single-cell-rna-seq-quality-metrics/dc664bb2-38e6-4559-9130-3a5740fb19aa/"
108    ],
109    "reference_files": [
110        "/reference-files/IGVFFI9282QLXO/",
111        "/reference-files/IGVFFI9744VSJF/"
112    ],
113    "release_timestamp": "2025-04-19T04:25:00.715919+00:00",
114    "s3_uri": "s3://igvf-files/2025/04/06/809aacc9-52e6-4062-ba82-4389f9868d6e/IGVFFI6422HBLC.tar.gz",
115    "schema_version": "7",
116    "secondary_dimensions": [
117        "gene"
118    ],
119    "status": "released",
120    "submitted_by": {
121        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
122        "title": "Diane Trout"
123    },
124    "submitted_file_name": "igvf_010/igvf_010_Subpool_15_total+core.tar.gz",
125    "summary": "cell by gene in sparse gene count matrix",
126    "upload_status": "validated",
127    "uuid": "809aacc9-52e6-4062-ba82-4389f9868d6e",
128    "workflow": {
129        "@id": "/workflows/IGVFWF6241JYDF/",
130        "name": "UCI snRNA-seq workflow"
131    }
132}