IGVFFI6356ADHE

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI6356ADHE/",
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    "accession": "IGVFFI6356ADHE",
    "aliases": [
        "ali-mortazavi:IGVF_B01_Subpool_4_total+core"
    ],
    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "b3187b44752106a009ff25a5a0af63dd",
    "content_summary": "cell by gene sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-09-03T23:39:15.789372+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI4373RWTV/",
        "/sequence-files/IGVFFI2185ZXQY/",
        "/sequence-files/IGVFFI4299WSBH/",
        "/sequence-files/IGVFFI5598BXFK/"
    ],
    "dimension1": "cell",
    "dimension2": "gene",
    "file_format": "tar",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS2413FYLA/",
        "accession": "IGVFDS2413FYLA",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/tissues/IGVFSM7772DGMA/",
                "accession": "IGVFSM7772DGMA",
                "classifications": [
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                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM2279TQMZ/",
                "accession": "IGVFSM2279TQMZ",
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                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
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                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
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            {
                "@id": "/tissues/IGVFSM3421UUOE/",
                "accession": "IGVFSM3421UUOE",
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                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
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                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM6969SYOD/",
                "accession": "IGVFSM6969SYOD",
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                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM7094ZNGP/",
                "accession": "IGVFSM7094ZNGP",
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                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
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                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM5782OIYL/",
                "accession": "IGVFSM5782OIYL",
                "classifications": [
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                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
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                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM0447EABS/",
                "accession": "IGVFSM0447EABS",
                "classifications": [
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                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM5157GFSA/",
                "accession": "IGVFSM5157GFSA",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            }
        ],
        "summary": "intermediate analysis of Parse SPLiT-seq data"
    },
    "file_size": 413572778,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI6356ADHE/@@download/IGVFFI6356ADHE.tar.gz",
    "input_file_for": [
        "/matrix-files/IGVFFI7274KDWO/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "b3c9b9b42857033f2355a373f5ef54fa",
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2024-09-05T18:27:44.656850+00:00",
    "s3_uri": "s3://igvf-files/2024/09/03/7dfa71d9-db7f-4478-89e9-141c1409e0bd/IGVFFI6356ADHE.tar.gz",
    "schema_version": "6",
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "IGVF_B01_Subpool_4_total+core.tar.gz",
    "summary": "cell by gene sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "7dfa71d9-db7f-4478-89e9-141c1409e0bd"
}