{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI6102JFAJ/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI6102JFAJ",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "98046de5f5d364041efa246aed1bb7ca",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T23:09:34.033465+00:00",
"derived_from": [
"/sequence-files/IGVFFI7150FRVL/",
"/sequence-files/IGVFFI6556BGBG/",
"/sequence-files/IGVFFI6167QLGP/",
"/sequence-files/IGVFFI4825GTDU/",
"/sequence-files/IGVFFI0723SSXJ/",
"/sequence-files/IGVFFI0729GYOC/",
"/sequence-files/IGVFFI8998MFOM/",
"/sequence-files/IGVFFI8187QOBY/",
"/sequence-files/IGVFFI5557VCMN/",
"/sequence-files/IGVFFI4671QSKH/",
"/sequence-files/IGVFFI2075LZEJ/",
"/sequence-files/IGVFFI4259DBMG/",
"/sequence-files/IGVFFI0425YMUX/",
"/sequence-files/IGVFFI9688OBJX/",
"/sequence-files/IGVFFI4469KAFG/",
"/sequence-files/IGVFFI3100HHUI/"
],
"file_format": "tar",
"file_format_specifications": [
{
"@id": "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/",
"description": "File format description for tar.gz archives of kallisto matrix market output"
}
],
"file_set": {
"@id": "/analysis-sets/IGVFDS4506MPBG/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4506MPBG",
"data_use_limitation_summaries": [
"no certificate"
],
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM6125CUPK/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6125CUPK",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000647/",
"status": "released",
"term_name": "right cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
},
{
"@id": "/sample-terms/NTR_0000751/",
"status": "released",
"term_name": "right hippocampal formation"
},
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq"
},
"file_size": 1346906268,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI6102JFAJ/@@download/IGVFFI6102JFAJ.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI0996MCPQ/",
"/matrix-files/IGVFFI1830EGOB/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "dd68a62506187281bbdca40e5b369aa2",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/9a18f078-c0b5-4535-8337-5d594501a8df/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T04:34:26.233375+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/4b711170-cccc-4325-9e59-557b9d4c8784/IGVFFI6102JFAJ.tar.gz",
"schema_version": "8",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_011/igvf_011_Subpool_11_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "4b711170-cccc-4325-9e59-557b9d4c8784",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}