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IGVFFI5827TJXJ

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validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3787XLRV(scRNA-seq)
Summary
cell by gene expression by antibody capture in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/572fa9bd-2c90-4e11-b9f5-8e6aaca61d70/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression by antibody capture in sparse gene count matrix
Aliases
harinder-singh:Bcells_don1_scRNAseq_mira_mtx
md5sum
97cdfb2ae684dd64d5c6ff4f08c1e8a3
File Size
2.4 GB
Submitted File Name
/ix/djishnu/Common_Folder/Jingyu_Data/scRNA_seq/human_B_cell_scRNA_seq_230327.umap.leiden_clusters.h5ad
Checkfiles Version
Legacy version of checkfiles
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression, antibody capture

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
MIRA matrix file format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 2 more samples

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
Ansuman Satpathy, Stanford
55 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
hdf5
filtered feature barcode matrix
Harinder Singh, University of Pittsburgh
158 MB
validated

Documents

1 item
Page
Description
Type
Download
Standardized File Format
Preview
MIRA matrix file format
file format specification