IGVFFI5731ZKRJ

released
validated
File Set
IGVFDS9078ZWQH(scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
jay-shendure:analysis_set_CRISPRa_K562_matrix
md5sum
162e6a316b8a588a57ac001948dba8ee
Content MD5sum
8b10a3e7a53c5ad166add04801bb8d04
File Size
538 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/Shendure_K562_CRISPRa_matrix.tar.gz

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

Samples

4 items
Sample Terms
Summary
InVitroSystem
K562 cell line (cellular sub pool: 10Xlane1), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library
InVitroSystem
K562 cell line (cellular sub pool: 10Xlane1), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library
InVitroSystem
K562 cell line (cellular sub pool: 10Xlane2), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library
InVitroSystem
K562 cell line (cellular sub pool: 10Xlane2), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
873 MB
validated

Files This File Derives From

48 items
fastq
reads
Jay Shendure, UW
812 MB
validated
fastq
reads
Jay Shendure, UW
2.3 GB
validated
fastq
reads
Jay Shendure, UW
855 MB
validated
fastq
reads
Jay Shendure, UW
276 MB
validated
fastq
reads
Jay Shendure, UW
2.5 GB
validated
fastq
reads
Jay Shendure, UW
761 MB
validated
fastq
reads
Jay Shendure, UW
6.6 GB
validated
fastq
reads
Jay Shendure, UW
2.5 GB
validated
fastq
reads
Jay Shendure, UW
757 MB
validated
fastq
reads
Jay Shendure, UW
6.7 GB
validated

Attribution