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IGVFFI5632PBRO

released
validated
File Set
IGVFDS0237MRDL(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:surya-mouse-colitis-tissue-rna-matrix
md5sum
7c8be8db863294154cd6a50cb01c488a
File Size
111 MB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_colitis_tissue.RNA.raw_counts.h5
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

5 items
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell

Files This File Derives From

24 items
fastq
reads
Jason Buenrostro, Broad
810 MB
validated
fastq
reads
Jason Buenrostro, Broad
4.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.9 GB
validated
fastq
reads
Jason Buenrostro, Broad
4.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.5 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.8 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.5 GB
validated