{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI5541DYZJ/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI5541DYZJ",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "07fd1e008a014a2e0e8ba191162e30fb",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T22:43:34.042133+00:00",
"derived_from": [
"/sequence-files/IGVFFI5739WLFQ/",
"/sequence-files/IGVFFI7061ONPZ/",
"/sequence-files/IGVFFI2729WNKQ/",
"/sequence-files/IGVFFI0517UQIJ/",
"/sequence-files/IGVFFI9970IKCF/",
"/sequence-files/IGVFFI9677GBYB/",
"/sequence-files/IGVFFI0295PZKN/",
"/sequence-files/IGVFFI0744OQVP/",
"/sequence-files/IGVFFI2608ZRCF/",
"/sequence-files/IGVFFI7639EOYN/",
"/sequence-files/IGVFFI6620CEFM/",
"/sequence-files/IGVFFI6364NBMW/",
"/sequence-files/IGVFFI1017MKEX/",
"/sequence-files/IGVFFI1859XNGM/",
"/sequence-files/IGVFFI0722LVXG/",
"/sequence-files/IGVFFI5669DIGD/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS4722UIJL/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4722UIJL",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM0413HPYX/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM0413HPYX",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000473/",
"status": "released",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"status": "released",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"status": "released",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"status": "released",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 1829830467,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI5541DYZJ/@@download/IGVFFI5541DYZJ.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI8712OENP/",
"/matrix-files/IGVFFI0091ZNMZ/",
"/matrix-files/IGVFFI1152NRZL/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "2f713e5622cc91c842896e0ff8d8aa64",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/646af791-b2ea-442d-b6a4-1e1b10de75bb/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T03:20:05.255160+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/14080ff2-5b66-4ce7-a98a-5652d20e9b45/IGVFFI5541DYZJ.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_007/igvf_007_Subpool_8_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "14080ff2-5b66-4ce7-a98a-5652d20e9b45",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}