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IGVFFI5345SNRS

released
validated
File Set
IGVFDS4883TFKC(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/1744edca-744a-465d-aacb-afaffa942057/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
ali-mortazavi:IGVF_B01_LeftCortex_anndata
md5sum
d2e351293d83e4069d94585b0fc1f1fb
File Size
7.1 GB
Submitted File Name
IGVFB01_LeftCortex_annotated_adata.h5ad
Checkfiles Version
Legacy version of checkfiles

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

Samples

8 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

8 items
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
947 MB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.0 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated
h5ad
sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI