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IGVFFI5252BPFG

released
validated
File Set
IGVFDS4963SRAJ(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf18_raw_rna_counts_10x2
md5sum
cda80554a82a9bc2364f5871e24bfbec
File Size
171 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l2_raw_feature_bc_matrix.h5
Checkfiles Version
v14

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files This File Derives From

4 items
fastq
reads
Ansuman Satpathy, Stanford
3.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
44 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
53 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.8 GB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford