IGVFFI5241SJON

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI5241SJON/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5241SJON",
    "aliases": [
        "charles-gersbach:matrix-file-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep2-mcool"
    ],
    "analysis_step_version": "/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/",
    "assay_titles": [
        "HiCAR"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_summary": "genomic position by genomic position in contact matrix",
    "content_type": "contact matrix",
    "creation_timestamp": "2024-11-07T16:07:18.180683+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI7905CWZC/",
        "/sequence-files/IGVFFI4866TRQV/"
    ],
    "file_format": "mcool",
    "file_format_specifications": [
        "/documents/cb4a6813-68a9-4aff-af23-7d78a04dfc58/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS2296EFNK/",
        "accession": "IGVFDS2296EFNK",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM1839OFIJ/",
                "accession": "IGVFSM1839OFIJ",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens",
                "treatments": [
                    {
                        "@id": "/treatments/bbe5df8d-a9e2-4a99-8942-9b3b7d12c605/",
                        "purpose": "perturbation",
                        "status": "released",
                        "summary": "Treatment of 1 μM Endothelin-1 for 3 days",
                        "treatment_term_name": "Endothelin-1"
                    }
                ]
            }
        ],
        "status": "released",
        "summary": "HiCAR: contact matrix"
    },
    "file_size": 33435583,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI5241SJON/@@download/IGVFFI5241SJON.mcool",
    "input_file_for": [
        "/matrix-files/IGVFFI2238JIOM/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "md5sum": "6731d9537de12db1ea5e0a9ff3eac95e",
    "principal_dimension": "genomic position",
    "reference_files": [
        "/reference-files/IGVFFI6815WBWB/"
    ],
    "release_timestamp": "2024-12-13T19:43:52.129819+00:00",
    "s3_uri": "s3://igvf-files/2024/11/07/ba14ecfe-14d1-48bb-8064-655991907d93/IGVFFI5241SJON.mcool",
    "schema_version": "7",
    "secondary_dimensions": [
        "genomic position"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/human/VP64_TA448_2_stim.1000.mcool",
    "summary": "genomic position by genomic position in contact matrix",
    "upload_status": "validated",
    "uuid": "ba14ecfe-14d1-48bb-8064-655991907d93"
}