Home

IGVFFI4997XXUM

released
validated
File Set
IGVFDS4659TKKE(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
39e272ea8d72fd67d0d1705884f9fb58
Content MD5sum
b16375f6613cd2f288467a144974c4a3
File Size
190 MB
Submitted File Name
igvf_010/igvf_010_Subpool_EX_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

2 items
fastq
reads
Ali Mortazavi, UCI
17 GB
validated
fastq
reads
Ali Mortazavi, UCI
11 GB
validated

Files Derived From This File

2 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
31 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
62 GB
validated