IGVFFI4962MLVR

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI4962MLVR/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4962MLVR",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "b8271caeb7919c343f9e5e7b0852bcb1",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:55:40.540823+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI9338WGZA/",
26        "/sequence-files/IGVFFI5686MLCK/",
27        "/sequence-files/IGVFFI1059LPMB/",
28        "/sequence-files/IGVFFI7234XOAJ/",
29        "/sequence-files/IGVFFI5230XDFN/",
30        "/sequence-files/IGVFFI7595JQDU/",
31        "/sequence-files/IGVFFI2912NICD/",
32        "/sequence-files/IGVFFI3321MICH/",
33        "/sequence-files/IGVFFI2608PGHL/",
34        "/sequence-files/IGVFFI8254ACCL/",
35        "/sequence-files/IGVFFI2948KVHG/",
36        "/sequence-files/IGVFFI7113LNRI/",
37        "/sequence-files/IGVFFI7172CWLG/",
38        "/sequence-files/IGVFFI1362KPQO/",
39        "/sequence-files/IGVFFI7861MKBV/",
40        "/sequence-files/IGVFFI3905DOTP/"
41    ],
42    "file_format": "tar",
43    "file_format_specifications": [
44        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
45    ],
46    "file_set": {
47        "@id": "/analysis-sets/IGVFDS3411CFPE/",
48        "@type": [
49            "AnalysisSet",
50            "FileSet",
51            "Item"
52        ],
53        "accession": "IGVFDS3411CFPE",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM1354VRSV/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM1354VRSV",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
67                ],
68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0002113/",
73                        "status": "released",
74                        "term_name": "kidney"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002369/",
78                        "status": "released",
79                        "term_name": "adrenal gland"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq: sparse gene count matrix"
90    },
91    "file_size": 1258757838,
92    "gene_list_for": [],
93    "href": "/matrix-files/IGVFFI4962MLVR/@@download/IGVFFI4962MLVR.tar.gz",
94    "input_file_for": [
95        "/matrix-files/IGVFFI5074IKKL/",
96        "/matrix-files/IGVFFI8534GAEL/"
97    ],
98    "integrated_in": [],
99    "lab": {
100        "@id": "/labs/ali-mortazavi/",
101        "title": "Ali Mortazavi, UCI"
102    },
103    "loci_list_for": [],
104    "md5sum": "b6e5c39bbcf4d2c6d34092e20ae73fa5",
105    "principal_dimension": "cell",
106    "quality_metrics": [
107        "/single-cell-rna-seq-quality-metrics/7ba77189-a984-410d-b712-141cb83176ac/"
108    ],
109    "reference_files": [
110        "/reference-files/IGVFFI9282QLXO/",
111        "/reference-files/IGVFFI9744VSJF/"
112    ],
113    "release_timestamp": "2025-04-19T03:59:37.442848+00:00",
114    "s3_uri": "s3://igvf-files/2025/04/06/48a78348-268c-4f58-9764-b6b89f72fe92/IGVFFI4962MLVR.tar.gz",
115    "schema_version": "7",
116    "secondary_dimensions": [
117        "gene"
118    ],
119    "status": "released",
120    "submitted_by": {
121        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
122        "title": "Diane Trout"
123    },
124    "submitted_file_name": "igvf_009/igvf_009_Subpool_5_total+core.tar.gz",
125    "summary": "cell by gene in sparse gene count matrix",
126    "upload_status": "validated",
127    "uuid": "48a78348-268c-4f58-9764-b6b89f72fe92",
128    "workflow": {
129        "@id": "/workflows/IGVFWF6241JYDF/",
130        "name": "UCI snRNA-seq workflow"
131    }
132}