IGVFFI4726EDUJ

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI4726EDUJ/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI4726EDUJ",
    "aliases": [
        "ali-mortazavi:IGVF_B01_Subpool_3_filtered_denoised"
    ],
    "analysis_step_version": "/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-09-03T23:39:01.322961+00:00",
    "derived_from": [
        "/matrix-files/IGVFFI6619VWBZ/"
    ],
    "file_format": "h5ad",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS0223KLTB/",
        "accession": "IGVFDS0223KLTB",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8093RPKR/",
                "accession": "IGVFSM8093RPKR",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "summary": "Parse SPLiT-seq: sparse gene count matrix"
    },
    "file_size": 1047109426,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI4726EDUJ/@@download/IGVFFI4726EDUJ.h5ad",
    "input_file_for": [
        "/matrix-files/IGVFFI5345SNRS/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "a2bb1524bf395ec95b3ea5a4612c9c3d",
    "principal_dimension": "cell",
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2024-09-05T18:27:46.602139+00:00",
    "s3_uri": "s3://igvf-files/2024/09/03/36ac0759-fa8f-41ca-a00d-5af1f69df3ca/IGVFFI4726EDUJ.h5ad",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "Subpool_3_filtered_adata_denoised.h5ad",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "36ac0759-fa8f-41ca-a00d-5af1f69df3ca"
}