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IGVFFI4463LVNM

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7340YDHF(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by gene expression in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression in sparse gene count matrix
Aliases
gary-hon:WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis_h5ad
md5sum
0d2d00c8447e13d056c0a0274f598df6
File Size
19 GB
Submitted File Name
/project/shared/gcrb_igvf/data/shared/TF_Perturbseq_pilot/H5AD/V0.1_TF_Perturbseq_pilot_sgRNACells_filtered_w_embedding_full_ipsc_reprocessed.h5ad
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW287) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW289) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW286) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW288) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

2 items
pkl
raw feature barcode matrix
Gary Hon, UT
589 MB
validated
hdf5
filtered feature barcode matrix
Gary Hon, UT
429 MB
validated