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IGVFFI4444FIKL

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9167HYTZ(scRNA-seq)
Summary
cell by gene expression by antibody capture in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/8ce84c63-40fd-4894-b163-044a613fe53c/
File Format
hdf5
Content Type
filtered feature barcode matrix
Content Summary
cell by gene expression by antibody capture in filtered feature barcode matrix
Aliases
harinder-singh:Bcells_don1_scRNAseq_filtered_feature_barcode_mtx
md5sum
3d5b6c7fa63bcd2e4ff6be8bc883b7c9
File Size
158 MB
Submitted File Name
/ix/djishnu/Common_Folder/Pease_Data/scRNA_220830/count/sample_filtered_feature_bc_matrix.h5
Checkfiles Version
Legacy version of checkfiles
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression, antibody capture

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Filtered feature barcode matrix file format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 2 more samples

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
Ansuman Satpathy, Stanford
55 MB
validated

Files This File Derives From

17 items
fastq
reads
Harinder Singh, University of Pittsburgh
3.3 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
591 MB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
2.0 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
2.0 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
15 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
603 MB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
3.6 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
3.6 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
3.1 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
35 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene expression by antibody capture in sparse gene count matrix
Harinder Singh, University of Pittsburgh
2.4 GB
validated

Documents

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Filtered feature barcode matrix file format
file format specification