IGVFFI4365KVPG

1{
2    "@context": "/terms/",
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6        "File",
7        "Item"
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9    "accession": "IGVFFI4365KVPG",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "4dfa6f178920ffb0c265e080fb83d934",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:59:17.587277+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI3394YZHA/",
26        "/sequence-files/IGVFFI4118RJVO/",
27        "/sequence-files/IGVFFI9579JLXV/",
28        "/sequence-files/IGVFFI5545QJYX/",
29        "/sequence-files/IGVFFI8668FTKN/",
30        "/sequence-files/IGVFFI7355NUHQ/",
31        "/sequence-files/IGVFFI7839CENK/",
32        "/sequence-files/IGVFFI4296IMBQ/",
33        "/sequence-files/IGVFFI8415MSEC/",
34        "/sequence-files/IGVFFI5643WZXS/",
35        "/sequence-files/IGVFFI7809FXJC/",
36        "/sequence-files/IGVFFI1403BSHU/",
37        "/sequence-files/IGVFFI8281XCPB/",
38        "/sequence-files/IGVFFI3472MPGI/",
39        "/sequence-files/IGVFFI2914UHML/",
40        "/sequence-files/IGVFFI4753GFDF/"
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53        "accession": "IGVFDS2150INIT",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM1137BDHM/",
58                "@type": [
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60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM1137BDHM",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
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68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0002113/",
73                        "status": "released",
74                        "term_name": "kidney"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002369/",
78                        "status": "released",
79                        "term_name": "adrenal gland"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq: sparse gene count matrix"
90    },
91    "file_size": 1346477922,
92    "gene_list_for": [],
93    "href": "/matrix-files/IGVFFI4365KVPG/@@download/IGVFFI4365KVPG.tar.gz",
94    "input_file_for": [
95        "/matrix-files/IGVFFI5074IKKL/",
96        "/matrix-files/IGVFFI8534GAEL/"
97    ],
98    "integrated_in": [],
99    "lab": {
100        "@id": "/labs/ali-mortazavi/",
101        "title": "Ali Mortazavi, UCI"
102    },
103    "loci_list_for": [],
104    "md5sum": "a51a1b1619d6f85ad39ecfbcc19e2e60",
105    "principal_dimension": "cell",
106    "quality_metrics": [
107        "/single-cell-rna-seq-quality-metrics/e6040f12-db86-4766-845d-ca9a65420781/"
108    ],
109    "reference_files": [
110        "/reference-files/IGVFFI9282QLXO/",
111        "/reference-files/IGVFFI9744VSJF/"
112    ],
113    "release_timestamp": "2025-04-19T18:06:03.671227+00:00",
114    "s3_uri": "s3://igvf-files/2025/04/06/d6ccc6f6-1a6b-49e0-9e02-5c4256a8d2e8/IGVFFI4365KVPG.tar.gz",
115    "schema_version": "7",
116    "secondary_dimensions": [
117        "gene"
118    ],
119    "status": "released",
120    "submitted_by": {
121        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
122        "title": "Diane Trout"
123    },
124    "submitted_file_name": "igvf_009/igvf_009_Subpool_15_total+core.tar.gz",
125    "summary": "cell by gene in sparse gene count matrix",
126    "upload_status": "validated",
127    "uuid": "d6ccc6f6-1a6b-49e0-9e02-5c4256a8d2e8",
128    "workflow": {
129        "@id": "/workflows/IGVFWF6241JYDF/",
130        "name": "UCI snRNA-seq workflow"
131    }
132}