{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI4354MUBS/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI4354MUBS",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "768b772db91f901026198a983540196f",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T23:13:13.753440+00:00",
"derived_from": [
"/sequence-files/IGVFFI9521KWMF/",
"/sequence-files/IGVFFI2033IHBM/",
"/sequence-files/IGVFFI8276TTCI/",
"/sequence-files/IGVFFI3978LEXD/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS3516UQYJ/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3516UQYJ",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2647QPOT/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2647QPOT",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
},
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
},
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000473/",
"status": "released",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"status": "released",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"status": "released",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"status": "released",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
},
{
"@id": "/sample-terms/UBERON_0002107/",
"status": "released",
"term_name": "liver"
},
{
"@id": "/sample-terms/UBERON_0002113/",
"status": "released",
"term_name": "kidney"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 958489689,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI4354MUBS/@@download/IGVFFI4354MUBS.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI3003LKFU/",
"/matrix-files/IGVFFI9737TFCW/",
"/matrix-files/IGVFFI5762MYZF/",
"/matrix-files/IGVFFI3964ARZC/",
"/matrix-files/IGVFFI5206ZCKM/",
"/matrix-files/IGVFFI2996KNFS/",
"/matrix-files/IGVFFI1208NQXL/",
"/matrix-files/IGVFFI5575XEVE/",
"/matrix-files/IGVFFI9921ZFSR/",
"/matrix-files/IGVFFI2163SAGG/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "3d8ee21fe5980ac56dd31fdf3f2500ff",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/2504c416-cdf0-412d-baa8-11d7e4ec9be2/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T04:50:11.842333+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/65effe05-4537-4ea2-8306-33618866ca22/IGVFFI4354MUBS.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_015/igvf_015_Subpool_UDI26_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "65effe05-4537-4ea2-8306-33618866ca22",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}