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IGVFFI4183MEQT

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2873EPIU(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by CRISPR guide capture in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
pkl
Content Type
raw feature barcode matrix
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
Aliases
gary-hon:H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis_pkl
md5sum
1d4f6b25a609013dc2295e5bccc426f2
File Size
1.4 GB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/Process_scRNA_CMPILOT2_Mini_/_pipeline_reprocessing/_lenti/aggr_dataframe/aggr_combined_df_full.pkl
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
CRISPR guide capture

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW271) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW270) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW269) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

48 items
fastq
reads
Gary Hon, UT
668 MB
validated
fastq
reads
Gary Hon, UT
11 GB
validated
fastq
reads
Gary Hon, UT
11 GB
validated
fastq
reads
Gary Hon, UT
1.0 GB
validated
fastq
reads
Gary Hon, UT
1.3 GB
validated
fastq
reads
Gary Hon, UT
478 MB
validated
fastq
reads
Gary Hon, UT
143 MB
validated
fastq
reads
Gary Hon, UT
236 MB
validated
fastq
reads
Gary Hon, UT
854 MB
validated
fastq
reads
Gary Hon, UT
11 GB
validated

Files Derived From This File

3 items
csv
unfiltered global differential expression
GRCh38 GENCODE 32 unfiltered global differential expression
Gary Hon, UT
285 KB
validated
csv
unfiltered local differential expression
GRCh38 GENCODE 32 unfiltered local differential expression
Gary Hon, UT
4.1 KB
validated
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
12 GB
validated