IGVFFI4183MEQT

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2873EPIU(interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression)
Summary
cell by CRISPR guide capture in raw feature barcode matrix
Analysis Step Version
File Format
pkl
Content Type
raw feature barcode matrix
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
Aliases
gary-hon:H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis_pkl
md5sum
1d4f6b25a609013dc2295e5bccc426f2
File Size
1.4 GB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/Process_scRNA_CMPILOT2_Mini_/_pipeline_reprocessing/_lenti/aggr_dataframe/aggr_combined_df_full.pkl

Matrix Details

Principal Dimension
cell
Secondary Dimensions
CRISPR guide capture

Samples

4 items
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW271), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW270), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW269), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Attribution