IGVFFI3992LEUW

released
validated
{
    "@context": "/terms/",
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    "accession": "IGVFFI3992LEUW",
    "aliases": [
        "ansuman-satpathy:igvf5_raw_rna_counts_10x1"
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    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v14",
    "content_summary": "cell by gene in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-01-28T15:35:27.563926+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI6132UEVZ/",
        "/sequence-files/IGVFFI4814KAPG/",
        "/sequence-files/IGVFFI5105QWTT/",
        "/sequence-files/IGVFFI1341XMVN/",
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    "file_format": "hdf5",
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            "description": "Raw RNA count matrix definition for 10x multiome"
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        "controlled_access": false,
        "data_use_limitation_summaries": [
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                "@id": "/multiplexed-samples/IGVFSM1143WWLK/",
                "@type": [
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                "accession": "IGVFSM1143WWLK",
                "classifications": [
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                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
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    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI3992LEUW/@@download/IGVFFI3992LEUW.h5",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "b63d2d526d0118f8784a6ab93591b3ae",
    "principal_dimension": "cell",
    "quality_metrics": [],
    "reference_files": [
        "/reference-files/IGVFFI8311QXYM/",
        "/reference-files/IGVFFI3944QOJF/"
    ],
    "release_timestamp": "2025-03-07T06:04:39.510070+00:00",
    "s3_uri": "s3://igvf-files/2025/01/28/8de4bfa4-35f0-4bef-8e81-b0084f9a0735/IGVFFI3992LEUW.h5",
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    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf5/e5l1_raw_feature_bc_matrix.h5",
    "summary": "cell by gene in raw feature barcode matrix",
    "upload_status": "validated",
    "uuid": "8de4bfa4-35f0-4bef-8e81-b0084f9a0735",
    "workflow": {
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        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
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}